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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
68
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
RRBS
1
Hi-C
1
RNA microarray
Assay category
472
Transcription
68
DNA binding
16
DNA accessibility
8
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
45
August, 2017
19
July, 2019
18
October, 2018
17
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
516
bam
495
bigWig
473
tsv
29
fastq
24
bed narrowPeak
19
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
569
Homo sapiens
Biosample type
531
tissue
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
925
pancreas
569
connective tissue
494
epithelium
473
adipose tissue
440
liver
375
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
569
AMP
1
T1D
Genome assembly (visualization)
499
hg19
494
GRCh38
Lab
569
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
biosample_type!
in vitro differentiated cells
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
570 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
RRBS
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
2
1
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primary cell
osteoblast
5
2
1
1
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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