Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 81candidate regulatory elements
  • 76accessible chromatin
  • 66target gene predictions
  • 49gene expression
  • 40chromatin state
  • 28binding sites
  • 25eQTL
  • 21histone modifications
  • 16differential activity
  • 14variant allelic effects
  • 8Fine-mapped variants
  • 2caQTL
  • 2pQTL
  • 2sQTL
Date released
  • 108September, 2022
  • 98February, 2021
  • 50November, 2021
  • 17February, 2024
  • 17June, 2020
  • 15September, 2023
  • 12October, 2022
  • 11August, 2021
  • 10March, 2025
  • 10May, 2021
  • 10May, 2024
  • 9February, 2020
  • 9January, 2020
  • 8March, 2020
  • 8May, 2020
  • 7March, 2023
  • 6January, 2022
  • 3April, 2020
  • 3August, 2017
  • 3May, 2022
  • 3November, 2020
  • 2January, 2021
  • 2January, 2025
  • 2September, 2018
  • 1August, 2018
  • 1February, 2023
  • 1January, 2018
  • 1June, 2021
  • 1November, 2022
  • 1October, 2019
Available data
  • 303bed bed3+
  • 73tsv
  • 53bigWig
  • 37bed bed9
  • 7txt
  • 2bigBed bed9
  • 2csv
  • 1bigBed narrowPeak
Organism
  • 430Homo sapiens
Collection Tags
  • 108EpiMap
  • 65AMP
  • 65T2DKP
  • 61DGA
  • 57ENCODE
  • 55ChIP-Atlas
  • 33 T2DKP
  • 15KPMP
  • 12STARNET
  • 10GTEx
  • 9HPAP
  • 9T1D
  • 7T2D
  • 6FNIH_projects-heart
  • 6eQTLCatalogue
  • 3CMDGA
  • 2FNIH_projects-liver
  • 1BLUEPRINT
Biosample type
  • 293primary cell
  • 105tissue
  • in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 2911vasculature
  • 2859bodily fluid
  • 2848blood
  • 2848blood vessel
  • 2658vein
  • 932epithelium
  • 651kidney
  • 463brain
  • 430connective tissue
  • 378musculature of body
  • 311lung
  • 289intestine
  • 274pancreas
  • 256heart
  • 244limb
  • 195skin of body
  • 185embryo
  • 174large intestine
  • 156liver
  • 141extraembryonic component
  • 119stomach
  • 103eye
  • 98adipose tissue
  • 89bone element
  • 84mammary gland
  • 84small intestine
  • 83uterus
  • 79artery
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64ureter
  • 62lymph node
  • 58penis
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 22lymphatic vessel
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 1pericardium
Project
  • 352AMP
  • 50ENCODE
  • 15KPMP
  • 4ITG
  • 4community
  • 3LungMap
  • 2T1D
Genome assembly (visualization)
  • 347hg19
  • 126GRCh38
  • 2hg18
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
TYPE

430 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
accessible chromatin
target gene predictions
gene expression
chromatin state
binding sites
eQTL
histone modifications
differential activity
variant allelic effects
Fine-mapped variants
caQTL
pQTL
sQTL
primary cell
fibroblast3164126
pericyte cell310101
osteoblast2522132
fibroblast of lung6442
foreskin fibroblast612142
tissue
adipose tissue72836141
subcutaneous adipose tissue22618214
omental fat pad5222223
subcutaneous abdominal adipose tissue51
cartilage tissue212
cell line
GM23248211111
fibroblast of cardiac tissue212
HT1080211
foreskin fibroblast111
adipose tissue derived mesenchymal stem cell11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego