Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 465total RNA-seq
  • 86ChIP-seq
  • 8ATAC-seq
  • 8DNase-seq
  • 6WGBS
  • 4pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 472Transcription
  • 86DNA binding
  • 16DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 41histone
  • 41histone modification
  • 27control
  • 24broad histone mark
  • 18transcription factor
  • 17narrow histone mark
  • 6RNA binding protein
Date released
  • 447February, 2021
  • 57August, 2017
  • 23October, 2018
  • 18July, 2019
  • 18June, 2019
  • 6November, 2020
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2October, 2019
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 534bam
  • 513bigWig
  • 473tsv
  • 46fastq
  • 30bed narrowPeak
  • 25bigBed narrowPeak
  • 14bed bed3+
  • 9bed broadPeak
  • 8bigBed broadPeak
  • 8tagAlign
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bed bed3
  • 1hdf5
Organism
  • 586Homo sapiens
Biosample type
  • 547tissue
  • in vitro differentiated cells
  • 39primary cell
  • 1stem cell
Organ
  • 943pancreas
  • 776liver
  • 587connective tissue
  • 500epithelium
  • 490adipose tissue
  • 392heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 586AMP
  • 1T1D
Genome assembly (visualization)
  • 516hg19
  • 512GRCh38
Lab
  • 586AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Audit category:
  • 15inconsistent ontology term
Audit category:
  • 12missing controlled_by
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

587 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511121
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego