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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1666ChIP-seq
  • 489ATAC-seq
  • 211DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 52pCHi-C
  • 30Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2Capture-C
  • 2HiChIP
  • 1DNAme array
  • 1GRO-seq
  • 1whole genome sequencing assay
Assay category
  • 1666DNA binding
  • 788DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 303D chromatin structure
  • 1DNA sequencing
Target of assay
  • 899histone modification
  • 898histone
  • 465transcription factor
  • 457narrow histone mark
  • 441broad histone mark
  • 300control
  • 103RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 282October, 2019
  • 247August, 2017
  • 218June, 2019
  • 196May, 2020
  • 169May, 2021
  • 140May, 2022
  • 120May, 2019
  • 98August, 2021
  • 98February, 2023
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 62February, 2021
  • 59July, 2019
  • 51December, 2017
  • 46September, 2018
  • 43March, 2020
  • 40May, 2024
  • 36November, 2019
  • 35December, 2018
  • 30January, 2019
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 7August, 2020
  • 5March, 2019
  • 4January, 2018
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2022
  • 1March, 2023
Available data
  • 1886bam
  • 1700bigWig
  • 1679bed narrowPeak
  • 1019bigBed narrowPeak
  • 859fastq
  • 351tagAlign
  • 315bed broadPeak
  • 284bigBed broadPeak
  • 246bed bed3+
  • 120tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
  • 1vcf
Organism
  • 2713Homo sapiens
Biosample type
  • 1452tissue
  • 714primary cell
  • 539cell line
  • in vitro differentiated cells
  • 8stem cell
Organ
  • 586liver
  • 446pancreas
  • 298epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 171vasculature
  • 165blood vessel
  • 120connective tissue
  • 119limb
  • 89adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2372AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1705hg19
  • 1653GRCh38
  • 1hg18
Lab
  • 2156AMP-T2D consortium
  • 231Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 103inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 83missing controlled_by
Audit category:
  • 39inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

2713 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
Capture-C
HiChIP
DNAme array
GRO-seq
whole genome sequencing assay
tissue
liver1452023111
islet of Langerhans7168174311
kidney2775136111
heart left ventricle35234111
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG2378115221
GM12878601
EndoC_BH115191322
Panc11311
smooth muscle cell of the coronary artery68
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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