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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1323
total RNA-seq
364
single cell RNA-seq
86
RNA microarray
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
3
snDrop-seq
Assay category
1705
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
627
February, 2021
178
August, 2021
168
July, 2018
145
May, 2020
98
May, 2021
90
February, 2023
89
August, 2017
60
May, 2022
56
September, 2020
49
April, 2018
49
July, 2019
47
September, 2023
27
September, 2018
25
February, 2020
24
October, 2019
20
November, 2019
14
November, 2020
13
March, 2020
9
April, 2020
8
December, 2019
4
May, 2023
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
1349
tsv
1208
bam
1204
bigWig
351
fastq
156
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
1809
Homo sapiens
Biosample type
1316
tissue
374
primary cell
in vitro differentiated cells
119
cell line
Organ
489
pancreas
466
connective tissue
400
adipose tissue
201
epithelium
190
liver
161
heart
146
bone element
128
kidney
65
blood vessel
65
vasculature
56
artery
21
brain
19
eye
9
lung
8
embryo
8
musculature of body
4
skeleton
3
limb
1
nerve
1
spinal cord
Project
1516
AMP
177
HPAP
60
T1D
47
KPMP
9
LungMap
Genome assembly (visualization)
1205
hg19
1203
GRCh38
Lab
1406
AMP-T2D consortium
177
Klaus Kaestner, Upenn
65
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
135
inconsistent ontology term
7
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1809 results
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total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue
382
islet of Langerhans
292
6
4
liver
167
1
1
kidney
49
64
bone element
84
+ See 62 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
52
exocrine cell
39
pancreatic beta cell
21
12
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
6
HepG2
9
2
H1-hESC
8
HEK293T
2
+ See 6 more…
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