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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 689ChIP-seq
  • 171total RNA-seq
  • 161ATAC-seq
  • 93single cell RNA-seq
  • 48DNase-seq
  • 45pCHi-C
  • 19RRBS
  • 15Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 689DNA binding
  • 275Transcription
  • 225DNA accessibility
  • 28DNA methylation
  • 153D chromatin structure
Target of assay
  • 401transcription factor
  • 227histone
  • 227histone modification
  • 137narrow histone mark
  • 90broad histone mark
  • 88recombinant protein
  • 75RNA binding protein
  • 64control
  • 31chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 144May, 2020
  • 116October, 2019
  • 96May, 2021
  • 64November, 2018
  • 62June, 2019
  • 60July, 2019
  • 48August, 2017
  • 45July, 2018
  • 44February, 2023
  • 40March, 2020
  • 39April, 2018
  • 35December, 2017
  • 28December, 2018
  • 25February, 2020
  • 24August, 2021
  • 21February, 2021
  • 21January, 2019
  • 20November, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7October, 2017
  • 5December, 2019
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1026bam
  • 963bigWig
  • 666bed narrowPeak
  • 594fastq
  • 512bigBed narrowPeak
  • 305tsv
  • 124bed broadPeak
  • 122bigBed broadPeak
  • 122tagAlign
  • 83bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 8hic
  • 7bed bed3
  • 7bedpe bed3+
  • 5hdf5
  • 5txt
  • 4tar
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1296Homo sapiens
Biosample type
  • 476primary cell
  • 463cell line
  • 353tissue
  • in vitro differentiated cells
  • 4stem cell
Organ
  • 411liver
  • 201pancreas
  • 152epithelium
  • 96brain
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 43connective tissue
  • 40heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 11artery
  • 9bone element
  • 8embryo
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1125AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1008hg19
  • 879GRCh38
Lab
  • 1105AMP-T2D consortium
  • 153Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 76inconsistent ontology term
  • 28inconsistent control
  • 4audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1296 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans221037611234
liver4231111
brain111121
heart531411
kidney12141
stem cell
hESC3
mesenchymal stem cell1
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