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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
142
total RNA-seq
89
single cell RNA-seq
84
ATAC-seq
27
DNase-seq
26
pCHi-C
11
small RNA-seq
9
Hi-C
5
snATAC-seq
4
MeRIP-seq
3
FAIRE-seq
2
snDrop-seq
1
DNAme array
Assay category
242
Transcription
142
DNA binding
119
DNA accessibility
9
3D chromatin structure
1
DNA methylation
Target of assay
119
histone
119
histone modification
83
narrow histone mark
36
broad histone mark
16
transcription factor
9
control
4
RNA binding protein
2
nucleotide modification
Date released
88
May, 2020
82
May, 2021
48
October, 2019
44
July, 2018
41
February, 2023
39
April, 2018
36
July, 2019
30
June, 2019
30
March, 2020
26
August, 2017
25
February, 2020
11
February, 2021
7
October, 2017
6
August, 2021
5
March, 2019
4
November, 2020
3
August, 2018
3
December, 2017
3
October, 2022
2
January, 2021
2
May, 2022
2
November, 2018
2
September, 2017
1
April, 2019
1
June, 2018
1
March, 2023
1
November, 2019
1
October, 2018
1
September, 2018
Available data
406
bam
400
bigWig
260
tsv
142
bed narrowPeak
121
fastq
96
tagAlign
56
bed bed3+
38
bigBed narrowPeak
26
bed broadPeak
24
bigBed broadPeak
8
hic
7
bedpe bed3+
6
bed bed3
5
txt
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
Organism
545
Homo sapiens
Biosample type
302
primary cell
242
tissue
in vitro differentiated cells
1
stem cell
Organ
138
pancreas
79
epithelium
71
brain
37
connective tissue
24
heart
19
kidney
17
adipose tissue
16
liver
9
musculature of body
8
bone element
8
skeleton
7
blood vessel
7
vasculature
4
artery
3
eye
3
limb
2
blood
2
bodily fluid
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
403
AMP
138
T1D
3
HPAP
1
ITG
Genome assembly (visualization)
412
hg19
357
GRCh38
Lab
395
AMP-T2D consortium
134
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
4
audit script error
Audit category:
14
missing controlled_by
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
545 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte
47
26
2
1
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic delta cell
10
pancreatic acinar cell
8
1
+ See 65 more…
tissue
islet of Langerhans
22
10
6
18
1
2
2
4
liver
6
2
1
1
1
brain
6
1
2
heart
2
1
4
1
1
frontal cortex
2
2
1
1
+ See 101 more…
stem cell
mesenchymal stem cell
1
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