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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 142ChIP-seq
  • 142total RNA-seq
  • 89single cell RNA-seq
  • 84ATAC-seq
  • 27DNase-seq
  • 26pCHi-C
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 242Transcription
  • 142DNA binding
  • 119DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 119histone
  • 119histone modification
  • 83narrow histone mark
  • 36broad histone mark
  • 16transcription factor
  • 9control
  • 4RNA binding protein
  • 2nucleotide modification
Date released
  • 88May, 2020
  • 82May, 2021
  • 48October, 2019
  • 44July, 2018
  • 41February, 2023
  • 39April, 2018
  • 36July, 2019
  • 30June, 2019
  • 30March, 2020
  • 26August, 2017
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 6August, 2021
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 406bam
  • 400bigWig
  • 260tsv
  • 142bed narrowPeak
  • 121fastq
  • 96tagAlign
  • 56bed bed3+
  • 38bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 545Homo sapiens
Biosample type
  • 302primary cell
  • 242tissue
  • in vitro differentiated cells
  • 1stem cell
Organ
  • 138pancreas
  • 79epithelium
  • 71brain
  • 37connective tissue
  • 24heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 403AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 412hg19
  • 357GRCh38
Lab
  • 395AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 30inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

545 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte472621
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans22106181224
liver62111
brain612
heart21411
frontal cortex2211
stem cell
mesenchymal stem cell1
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