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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 547ChIP-seq
  • 77ATAC-seq
  • 29total RNA-seq
  • 21DNase-seq
  • 19RRBS
  • 19pCHi-C
  • 8WGBS
  • 7snATAC-seq
  • 6Hi-C
  • 6MeRIP-seq
  • 4STARR-seq
  • 4single cell RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 547DNA binding
  • 106DNA accessibility
  • 33Transcription
  • 27DNA methylation
  • 63D chromatin structure
Target of assay
  • 385transcription factor
  • 108histone
  • 108histone modification
  • 88recombinant protein
  • 71RNA binding protein
  • 55control
  • 54broad histone mark
  • 54narrow histone mark
  • 31chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 68October, 2019
  • 62November, 2018
  • 56May, 2020
  • 32December, 2017
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • 22August, 2017
  • 21January, 2019
  • 19November, 2019
  • 18August, 2021
  • 14May, 2019
  • 14May, 2021
  • 10February, 2021
  • 10March, 2020
  • 7October, 2018
  • 6November, 2020
  • 5December, 2019
  • 3February, 2023
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 620bam
  • 563bigWig
  • 524bed narrowPeak
  • 474bigBed narrowPeak
  • 473fastq
  • 98bed broadPeak
  • 98bigBed broadPeak
  • 45tsv
  • 27bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 5hdf5
  • 4tar
  • 1bed bed3
Organism
  • 751Homo sapiens
Biosample type
  • 463cell line
  • 174primary cell
  • 111tissue
  • in vitro differentiated cells
  • 3stem cell
Organ
  • 395liver
  • 73epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 8embryo
  • 7artery
  • 6connective tissue
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 722AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 596hg19
  • 522GRCh38
Lab
  • 710AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
Audit category:
  • 46inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

751 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
WGBS
snATAC-seq
Hi-C
MeRIP-seq
STARR-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2335152112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
stem cell
hESC3
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