Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2909target gene predictions
  • 2638pQTL
  • 1630candidate regulatory elements
  • 900chromatin state
  • 611gene expression
  • 484differential activity
  • 397accessible chromatin
  • 180eQTL
  • 135variant allelic effects
  • 93binding sites
  • 74Fine-mapped variants
  • 25caQTL
  • 7sQTL
  • 4variant to gene
  • 3meQTL
  • 2other
Date released
  • 2636February, 2025
  • 2394September, 2022
  • 1940July, 2026
  • 950February, 2021
  • 320May, 2026
  • 292February, 2024
  • 282September, 2023
  • 209May, 2021
  • 148May, 2020
  • 118March, 2020
  • 111November, 2021
  • 102January, 2022
  • 101October, 2022
  • 74August, 2021
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 35May, 2022
  • 31August, 2017
  • 30March, 2024
  • 28January, 2021
  • 24January, 2020
  • 21July, 2025
  • 19April, 2020
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7February, 2023
  • 5October, 2019
  • 4March, 2026
  • 2January, 2018
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2020
Available data
  • 5337bed bed3+
  • 3476tsv
  • 829bed bed9
  • 112txt
  • 90bigWig
  • 35bigBed bed9
  • 34bed bed9+
  • 7bigBed narrowPeak
  • 2csv
  • 1bam
Organism
  • 10044Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2394EpiMap
  • 1414ENCODE-rE2G
  • 913ENCODE
  • 530DGA
  • 393HDMA
  • 320pyxis
  • 281KPMP
  • 252T1D
  • 192AMP
  • 1744DN
  • 151GTEx
  • 148T2DKP
  • 134 T2DKP
  • 133CATlas
  • 101T2D
  • 101eQTLCatalogue
  • 98BLUEPRINT
  • 55HPAP
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
Biosample type
  • 5637tissue
  • 3211primary cell
  • 1238cell line
  • in vitro differentiated cells
  • 4stem cell
Organ
  • 3289blood
  • 2845vasculature
  • 2817blood vessel
  • 2789bodily fluid
  • 2655vein
  • 794brain
  • 697kidney
  • 669epithelium
  • 445heart
  • 419lung
  • 354connective tissue
  • 340musculature of body
  • 324intestine
  • 256skin of body
  • 240pancreas
  • 220limb
  • 206large intestine
  • 183liver
  • 153extraembryonic component
  • 152embryo
  • 131stomach
  • 130adipose tissue
  • 109muscle organ
  • 95adrenal gland
  • 94eye
  • 94small intestine
  • 89thymus
  • 88placenta
  • 85uterus
  • 83mammary gland
  • 76bone element
  • 69ureter
  • 67artery
  • 67prostate gland
  • 60__MARKER__
  • 60spleen
  • 56gonad
  • 51penis
  • 46spinal cord
  • 45thyroid gland
  • 44esophagus
  • 40lymph node
  • 30ovary
  • 26testis
  • 22nerve
  • 21lymphoid tissue
  • 20mouth
  • 16skeleton
  • 15lymphatic vessel
  • 14breast
  • 12pituitary gland
  • 12urinary bladder
  • 12vagina
  • 11bronchus
  • 11tongue
  • 7bone marrow
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 9627AMP
  • 281KPMP
  • 111ENCODE
  • 32T1D
  • 19LungMap
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 4271hg19
  • 3320GRCh38
  • 4hg18
biosample_type!
  • in vitro differentiated cells
software_used.software.name!
  • macs
BIOSAMPLE
TYPE

10092 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
candidate regulatory elements
chromatin state
gene expression
differential activity
accessible chromatin
eQTL
variant allelic effects
binding sites
Fine-mapped variants
caQTL
sQTL
variant to gene
meQTL
other
tissue
whole blood26351
heart383721412
stomach42401911
head of caudate nucleus86
muscle of arm3333161
primary cell
fibroblast2831024261
endothelial cell1739258223
T-cell644
common myeloid progenitor, CD34-positive262713
CD4-positive, alpha-beta T cell5283
cell line
A5493321181
HeLa-S359531
H1-hESC391181
K56230771
MCF-713951
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego