Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2639pQTL
  • 900chromatin state
  • 883histone modifications
  • 844accessible chromatin
  • 832candidate regulatory elements
  • 779binding sites
  • 494target gene predictions
  • 186eQTL
  • 135variant allelic effects
  • 130differential activity
  • 84Fine-mapped variants
  • 15gene expression
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
Date released
  • 2639February, 2025
  • 2250February, 2021
  • 811September, 2022
  • 333November, 2021
  • 307February, 2024
  • 272May, 2021
  • 268June, 2020
  • 148May, 2020
  • 111September, 2023
  • 109March, 2020
  • 103January, 2022
  • 101October, 2022
  • 69January, 2020
  • 56January, 2021
  • 51August, 2021
  • 49May, 2022
  • 40May, 2024
  • 38March, 2025
  • 32February, 2023
  • 31August, 2017
  • 26February, 2020
  • 26November, 2022
  • 19April, 2020
  • 15March, 2023
  • 12November, 2019
  • 12October, 2019
  • 9May, 2019
  • 8April, 2019
  • 3September, 2018
  • 2January, 2025
  • 2November, 2020
  • 1August, 2020
  • 1August, 2022
  • 1June, 2021
Available data
  • 4137bed bed3+
  • 2902tsv
  • 829bed bed9
  • 534bigWig
  • 35bigBed bed9
  • 34bed bed9+
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
  • 2csv
Organism
  • 7908Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1709ChIP-Atlas
  • 893ENCODE
  • 798EpiMap
  • 398T2DKP
  • 396DGA
  • 394AMP
  • 327T1D
  • 181BLUEPRINT
  • 1744DN
  • 124 T2DKP
  • 111T2D
  • 110KPMP
  • 101eQTLCatalogue
  • 96GTEx
  • 77CMDGA
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12HPAP
  • 12ROADMAP
Biosample type
  • 4291tissue
  • 1973cell line
  • 1686primary cell
  • in vitro differentiated cells
  • 4stem cell
Organ
  • 2828vasculature
  • 2807bodily fluid
  • 2801blood
  • 2786blood vessel
  • 2653vein
  • 575epithelium
  • 325brain
  • 305connective tissue
  • 299kidney
  • 231musculature of body
  • 176intestine
  • 171pancreas
  • 170lung
  • 164heart
  • 147limb
  • 135embryo
  • 125skin of body
  • 114liver
  • 106large intestine
  • 84eye
  • 77extraembryonic component
  • 73uterus
  • 71stomach
  • 69adipose tissue
  • 59artery
  • 57bone element
  • 56mammary gland
  • 51prostate gland
  • 46lymph node
  • 46small intestine
  • 44adrenal gland
  • 41placenta
  • 38penis
  • 38ureter
  • 32gonad
  • 29esophagus
  • 27thymus
  • 26spinal cord
  • 21spleen
  • 17nerve
  • 17testis
  • 15lymphatic vessel
  • 14ovary
  • 14thyroid gland
  • 13lymphoid tissue
  • 12bronchus
  • 12pituitary gland
  • 12skeleton
  • 11bone marrow
  • 10mouth
  • 8breast
  • 5tongue
  • 5trachea
  • 5urinary bladder
  • 5vagina
Project
  • 7416AMP
  • 333ENCODE
  • 110KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 5003hg19
  • 1844GRCh38
  • 4hg18
biosample_type!
  • in vitro differentiated cells
software_used.software.name!
  • r
BIOSAMPLE
TYPE

7956 results

search-icontable-tab-icon
Clear Filters
pQTL
chromatin state
histone modifications
accessible chromatin
candidate regulatory elements
binding sites
target gene predictions
eQTL
variant allelic effects
differential activity
Fine-mapped variants
gene expression
caQTL
sQTL
hQTL
variant to gene
meQTL
other
tissue
whole blood2635
heart211518112
stomach19132121
kidney1621015111
brain183213121
cell line
HeLa-S332152
H1-hESC111238
K5627111217
A5491811321
breast cancer cell119
primary cell
monocyte8618124121
CD8-positive, alpha-beta T cell130475
endothelial cell115327122
fibroblast1631426
macrophage12339311
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego