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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 298ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 298DNA binding
  • 3Transcription
Target of assay
  • 905histone modification
  • 904histone
  • 465transcription factor
  • 459narrow histone mark
  • 445broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 71November, 2017
  • 42August, 2017
  • 39October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 14April, 2019
  • 13December, 2017
  • 8June, 2019
  • 6November, 2018
  • 6September, 2017
  • 5August, 2021
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 3July, 2019
  • 3May, 2021
  • 3October, 2017
  • 2November, 2019
Available data
  • 276bam
  • 146fastq
  • 58tagAlign
  • 23bigWig
  • 4bed bed3+
  • 3tsv
Organism
  • 305Homo sapiens
Biosample type
  • 187tissue
  • 83cell line
  • in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 107liver
  • 52pancreas
  • 31brain
  • 27connective tissue
  • 26epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 306AMP
Genome assembly (visualization)
  • 27hg19
  • 7GRCh38
Lab
  • 294AMP-T2D consortium
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 3Kyle Gaulton, UCSD
Audit category:
  • 13inconsistent ontology term
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

306 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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