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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 465ChIP-seq
Assay category
  • 465DNA binding
Target of assay
  • 905histone modification
  • 904histone
  • 465transcription factor
  • 459narrow histone mark
  • 445broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 244November, 2017
  • 64November, 2018
  • 31December, 2017
  • 28December, 2018
  • 25August, 2017
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 459bigWig
  • 448bam
  • 437bed narrowPeak
  • 421fastq
  • 403bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 13bed bed3+
  • 5tagAlign
  • 3tar
Organism
  • 465Homo sapiens
Biosample type
  • 361cell line
  • 94tissue
  • in vitro differentiated cells
  • 10primary cell
Organ
  • 336liver
  • 51blood
  • 51bodily fluid
  • 18connective tissue
  • 18pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9vasculature
  • 8blood vessel
  • 6epithelium
  • 6spleen
  • 5artery
  • 3brain
  • 1eye
Project
  • 465AMP
Genome assembly (visualization)
  • 450hg19
  • 411GRCh38
Lab
  • 449AMP-T2D consortium
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 30missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

465 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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