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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
85
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1780
Transcription
1673
DNA binding
790
DNA accessibility
97
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Target of assay
905
histone modification
904
histone
465
transcription factor
459
narrow histone mark
445
broad histone mark
306
control
103
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
1
July, 2025
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1470
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
249
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Organism
4522
Homo sapiens
Biosample type
2778
tissue
1088
primary cell
662
cell line
in vitro differentiated cells
10
stem cell
Organ
943
pancreas
776
liver
587
connective tissue
500
epithelium
490
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
97
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3899
AMP
324
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
2916
hg19
2863
GRCh38
1
hg18
Lab
3572
AMP-T2D consortium
324
Klaus Kaestner, Upenn
296
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Audit category:
238
inconsistent ontology term
40
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
type!!!
Biosample
BIOSAMPLE
ASSAY
4538 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
...and 8 more
tissue
islet of Langerhans
71
292
68
6
1
7
4
3
1
4
1
adipose tissue
2
382