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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
2
DNase-seq
Assay category
58
DNA binding
2
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
1
August, 2017
1
October, 2019
Available data
876
bam
778
bigWig
567
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
60
Homo sapiens
Biosample type
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
58
liver
1
connective tissue
1
pancreas
Project
60
AMP
Genome assembly (visualization)
60
hg19
46
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
tissue
month_released!
January, 2018
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
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