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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ChIP-seq
3
DNase-seq
2
ATAC-seq
Assay category
367
DNA binding
5
DNA accessibility
Target of assay
330
transcription factor
81
recombinant protein
63
RNA binding protein
32
histone
32
histone modification
31
chromatin remodeller
17
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
December, 2017
10
October, 2019
1
August, 2017
Available data
876
bam
784
bigWig
572
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
372
Homo sapiens
Biosample type
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
307
liver
54
blood
54
bodily fluid
15
epithelium
7
pancreas
3
connective tissue
1
kidney
Project
372
AMP
Genome assembly (visualization)
368
hg19
338
GRCh38
Lab
372
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
tissue
files.file_type!
txt
month_released!
September, 2017
BIOSAMPLE
ASSAY
372 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
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