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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
18
total RNA-seq
4
STARR-seq
4
pCHi-C
2
Hi-C
1
ATAC-seq
1
DNase-seq
1
WGBS
1
whole genome sequencing assay
Assay category
403
DNA binding
18
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
306
transcription factor
89
recombinant protein
64
control
56
RNA binding protein
30
histone
30
histone modification
21
chromatin remodeller
16
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
33
August, 2021
15
December, 2017
15
October, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
May, 2020
Available data
396
bam
382
fastq
358
bigWig
330
bed narrowPeak
308
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
21
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
435
Homo sapiens
Biosample type
tissue
420
cell line
primary cell
15
in vitro differentiated cells
Organ
416
liver
103
epithelium
98
connective tissue
95
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
61
blood
61
bodily fluid
37
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
435
AMP
Genome assembly (visualization)
356
hg19
294
GRCh38
Lab
402
AMP-T2D consortium
33
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
tissue
month_released!
September, 2018
BIOSAMPLE
ASSAY
435 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
Hi-C
ATAC-seq
DNase-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
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in vitro differentiated cells
hepatocyte
15
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