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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
3
MeRIP-seq
Assay category
120
DNA binding
Target of assay
410
transcription factor
152
histone
histone modification
121
control
89
recombinant protein
76
RNA binding protein
76
broad histone mark
75
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
58
November, 2017
11
August, 2021
9
December, 2017
9
October, 2019
8
August, 2017
8
February, 2018
6
May, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
109
bam
87
fastq
15
bigWig
14
tagAlign
6
bed bed3+
2
bed narrowPeak
2
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
123
Homo sapiens
Biosample type
tissue
85
cell line
37
in vitro differentiated cells
primary cell
1
stem cell
Organ
63
liver
12
pancreas
9
epithelium
8
connective tissue
7
embryo
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
123
AMP
Genome assembly (visualization)
21
hg19
8
GRCh38
Lab
111
AMP-T2D consortium
5
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
biosample_type!
primary cell
tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
62
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
+ See 4 more…
in vitro differentiated cells
adipocyte
8
neural progenitor cell
7
embryonic stem cell
6
pancreatic endoderm
5
Hepatic endoderm
2
+ See 7 more…
stem cell
hESC
1
See all biosamples
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