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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
16
ATAC-seq
11
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
37
DNA binding
26
DNA accessibility
11
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
49
May, 2021
23
February, 2023
8
January, 2021
Available data
bam
24
fastq
18
bed narrowPeak
6
txt
5
bigWig
Organism
80
Homo sapiens
Biosample type
primary cell
47
in vitro differentiated cells
28
tissue
5
cell line
Organ
27
pancreas
1
thymus
Project
48
AMP
32
T1D
Genome assembly (visualization)
5
hg19
Lab
538
AMP-T2D consortium
142
Katalin Susztak, Upenn
80
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
biosample_type!
primary cell
files.file_type!
bam
organ_slims!
bone element
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
11
5
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
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