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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
423
bigWig
399
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
48
Homo sapiens
Biosample type
48
tissue
1
in vitro differentiated cells
Organ
205
kidney
181
heart
108
liver
105
pancreas
92
bone element
88
connective tissue
53
eye
49
adipose tissue
46
blood vessel
46
vasculature
43
epithelium
39
artery
39
brain
38
musculature of body
20
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
49
AMP-T2D consortium
biosample_type!
primary cell
files.file_type!
bam
month_released!
February, 2018
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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