Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
87
ATAC-seq
70
ChIP-seq
65
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
pCHi-C
1
whole genome sequencing assay
Assay category
171
Transcription
93
DNA accessibility
70
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
37
histone
37
histone modification
24
transcription factor
21
narrow histone mark
16
broad histone mark
9
control
6
RNA binding protein
Date released
270
August, 2021
128
August, 2017
117
February, 2023
98
February, 2021
65
May, 2021
61
October, 2019
47
March, 2020
47
September, 2023
42
May, 2022
40
May, 2024
25
February, 2020
19
April, 2020
15
May, 2023
14
November, 2017
13
July, 2019
10
November, 2020
8
January, 2018
8
January, 2021
8
October, 2017
5
December, 2019
4
July, 2018
4
March, 2019
4
March, 2023
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
May, 2020
1
October, 2022
Available data
bam
501
bigWig
416
bed narrowPeak
315
fastq
306
bigBed narrowPeak
244
tsv
104
tagAlign
64
bed broadPeak
64
xls
58
bigBed broadPeak
57
txt
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
348
Homo sapiens
Biosample type
244
tissue
primary cell
53
cell line
52
in vitro differentiated cells
Organ
130
kidney
92
heart
32
liver
21
pancreas
18
epithelium
13
brain
6
blood vessel
6
vasculature
5
connective tissue
2
artery
1
adipose tissue
1
thymus
Project
348
AMP
1
T1D
Genome assembly (visualization)
64
GRCh38
26
hg19
Lab
132
AMP-T2D consortium
128
Katalin Susztak, Upenn
49
Kyle Gaulton, UCSD
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
19
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
bam
BIOSAMPLE
ASSAY
349 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
pCHi-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 18 more…
cell line
HepG2
19
9
2
1
1
EndoC_BH1
16
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
embryonic stem cell
5
37
5
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
See all biosamples
Download