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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256ChIP-seq
  • 240ATAC-seq
  • 176single cell RNA-seq
  • 148total RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28snATAC-seq
  • 24Hi-C
  • 11RRBS
  • 10MeRIP-seq
  • 10WGBS
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNase-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 328Transcription
  • 269DNA accessibility
  • 256DNA binding
  • 243D chromatin structure
  • 21DNA methylation
  • 1DNA sequencing
Target of assay
  • 198histone
  • 198histone modification
  • 101broad histone mark
  • 97narrow histone mark
  • 34control
  • 29transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 270August, 2021
  • 128August, 2017
  • 117February, 2023
  • 98February, 2021
  • 65May, 2021
  • 61October, 2019
  • 47March, 2020
  • 47September, 2023
  • 42May, 2022
  • 40May, 2024
  • 25February, 2020
  • 19April, 2020
  • 15May, 2023
  • 14November, 2017
  • 13July, 2019
  • 10November, 2020
  • 8January, 2018
  • 8January, 2021
  • 8October, 2017
  • 5December, 2019
  • 4July, 2018
  • 4March, 2019
  • 4March, 2023
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1052Homo sapiens
Biosample type
  • 870tissue
  • primary cell
  • 103in vitro differentiated cells
  • 80cell line
  • 7stem cell
Organ
  • 205kidney
  • 181heart
  • 108liver
  • 105pancreas
  • 92bone element
  • 88connective tissue
  • 53eye
  • 49adipose tissue
  • 46blood vessel
  • 46vasculature
  • 43epithelium
  • 39artery
  • 39brain
  • 38musculature of body
  • 20lung
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1blood
  • 1bodily fluid
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 956AMP
  • 47KPMP
  • 34T1D
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 161hg19
  • 157GRCh38
  • 5hg18
Lab
  • 630AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 80Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 132inconsistent ontology term
  • 11audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
biosample_type!
  • primary cell
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1060 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
MeRIP-seq
WGBS
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 5 more
tissue
kidney756449611
islet of Langerhans41302647314
bone element84
liver23201201113
left cardiac atrium4018
in vitro differentiated cells
embryonic stem cell37651
adipocyte14811
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
HepG2199222
EndoC_BH118162321
EndoC-BH1
HEK293T2
GM128781
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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