Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
520
ChIP-seq
Assay category
520
DNA binding
Target of assay
520
histone
520
histone modification
455
transcription factor
295
narrow histone mark
242
control
225
broad histone mark
94
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
August, 2017
May, 2019
85
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
22
May, 2021
21
December, 2017
17
August, 2021
16
February, 2018
12
October, 2017
10
November, 2019
7
January, 2019
3
March, 2020
Available data
465
bigWig
464
bed narrowPeak
428
bam
237
bigBed narrowPeak
160
tagAlign
92
fastq
23
bed broadPeak
14
bigBed broadPeak
bed bed3+
1
tagAlign bed3+
Organism
520
Homo sapiens
Biosample type
415
tissue
primary cell
67
in vitro differentiated cells
38
cell line
Organ
159
brain
82
heart
67
liver
52
pancreas
43
limb
27
epithelium
24
nerve
20
kidney
18
artery
18
blood vessel
18
vasculature
10
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
connective tissue
1
lymph node
1
pituitary gland
Project
516
AMP
4
T1D
Genome assembly (visualization)
443
GRCh38
370
hg19
Lab
462
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bed bed3+
month_released!
August, 2017
May, 2019
BIOSAMPLE
ASSAY
520 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
left cardiac atrium
35
liver
32
heart left ventricle
24
tibial nerve
24
islet of Langerhans
23
+ See 87 more…
in vitro differentiated cells
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
8
Hepatic endoderm
2
+ See 5 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
See all biosamples
Download