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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
69
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
398
Transcription
69
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
53
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
399
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
481
Homo sapiens
Biosample type
481
tissue
primary cell
1
in vitro differentiated cells
Organ
770
liver
625
connective tissue
571
pancreas
482
adipose tissue
353
heart
238
brain
236
kidney
194
blood vessel
194
vasculature
158
bone element
135
artery
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
49
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
482
AMP
Genome assembly (visualization)
417
hg19
415
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
biosample_type!
primary cell
files.file_type!
bed bed3+
month_released!
May, 2023
organ_slims!
epithelium
BIOSAMPLE
ASSAY
482 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
381
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
8
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in vitro differentiated cells
white fat cell
1
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