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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
total RNA-seq
282
ChIP-seq
29
DNase-seq
9
ATAC-seq
6
WGBS
6
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
282
DNA binding
39
DNA accessibility
7
DNA methylation
Target of assay
216
histone
216
histone modification
126
narrow histone mark
90
broad histone mark
49
control
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
87
October, 2019
82
November, 2017
57
August, 2017
28
May, 2019
26
June, 2019
23
October, 2018
21
July, 2019
17
October, 2017
14
February, 2020
3
March, 2020
3
November, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
Available data
666
bam
625
bigWig
422
tsv
205
bed narrowPeak
126
bigBed narrowPeak
126
tagAlign
56
fastq
39
bed broadPeak
33
bed bed3+
29
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
bed bed3
bedpe bed3+
1
tagAlign bed3+
Organism
751
Homo sapiens
Biosample type
752
tissue
primary cell
Organ
774
liver
639
connective tissue
596
pancreas
488
adipose tissue
377
heart
318
kidney
264
brain
198
blood vessel
198
vasculature
154
bone element
139
artery
122
limb
117
epithelium
80
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
752
AMP
Genome assembly (visualization)
625
GRCh38
566
hg19
Lab
752
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
16
missing controlled_by
biosample_type!
primary cell
files.file_type!
bed bed3
bedpe bed3+
BIOSAMPLE
ASSAY
752 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
FAIRE-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
brain
1
20
14
1
layer of hippocampus
23
subcutaneous adipose tissue
7
12
1
1
1
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