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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
491
ChIP-seq
Assay category
491
DNA binding
Target of assay
283
transcription factor
116
histone
116
histone modification
89
control
66
recombinant protein
65
broad histone mark
51
narrow histone mark
38
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
666
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
107
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
477
bam
409
fastq
397
bigWig
379
bed narrowPeak
356
bigBed narrowPeak
78
tagAlign
64
bed broadPeak
58
bigBed broadPeak
15
bed bed3+
3
tar
Organism
491
Homo sapiens
Biosample type
315
cell line
130
tissue
43
in vitro differentiated cells
primary cell
3
stem cell
Organ
378
liver
82
brain
19
epithelium
13
embryo
Project
491
AMP
Genome assembly (visualization)
351
GRCh38
349
hg19
Lab
491
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
32
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
491 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
liver
38
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 3 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
See all biosamples
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