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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
397
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
241
transcription factor
85
histone
85
histone modification
68
control
66
recombinant protein
50
broad histone mark
35
narrow histone mark
34
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
666
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
276
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
107
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
62
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
384
bam
325
bigWig
316
fastq
307
bed narrowPeak
306
bigBed narrowPeak
78
tagAlign
65
bed broadPeak
58
bigBed broadPeak
3
tar
1
bedpe
1
hic
Organism
402
Homo sapiens
Biosample type
315
cell line
87
tissue
primary cell
Organ
315
liver
82
brain
5
pancreas
Project
402
AMP
Genome assembly (visualization)
276
GRCh38
275
hg19
Lab
397
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
files.file_type!
bed bed3
organ_slims!
gonad
BIOSAMPLE
ASSAY
402 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
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