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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
129
ChIP-seq
93
single cell RNA-seq
84
RNA microarray
59
ATAC-seq
27
DNase-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
224
Transcription
129
DNA binding
86
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
216
February, 2021
92
August, 2021
57
April, 2019
44
February, 2023
40
May, 2024
27
June, 2019
21
May, 2019
13
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
272
bigWig
265
bam
222
tsv
193
bed narrowPeak
88
bigBed narrowPeak
88
txt
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
4
bed bed3
3
bedpe bed3+
3
hic
Organism
531
Homo sapiens
Biosample type
464
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
775
liver
639
connective tissue
594
pancreas
487
adipose tissue
373
heart
317
kidney
264
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
121
limb
118
epithelium
79
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
531
AMP
Genome assembly (visualization)
316
GRCh38
247
hg19
Lab
491
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
84
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
bed bedMethyl
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
531 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
DNase-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
bone element
84
heart left ventricle
3
35
18
2
3
1
1
2
left cardiac atrium
40
18
1
bone tissue
58
coronary artery
1
5
36
2
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cell line
smooth muscle cell of the coronary artery
52
6
8
in vitro differentiated cells
cardiac fibroblast
1
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