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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
84
RNA microarray
79
ChIP-seq
58
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
127
Transcription
79
DNA binding
63
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
216
February, 2021
50
May, 2019
43
February, 2023
26
October, 2019
6
August, 2021
6
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
219
bam
184
bigWig
124
tsv
120
bed narrowPeak
88
txt
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
356
Homo sapiens
Biosample type
290
tissue
66
cell line
primary cell
Organ
775
liver
639
connective tissue
594
pancreas
487
adipose tissue
373
heart
317
kidney
264
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
121
limb
118
epithelium
79
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
356
AMP
Genome assembly (visualization)
234
GRCh38
204
hg19
Lab
356
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
bed bedMethyl
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
356 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
5
36
2
tibial artery
1
23
1
2
aorta
1
13
4
1
1
1
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cell line
smooth muscle cell of the coronary artery
52
6
8
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