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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
79
DNA binding
65
Transcription
51
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
6
August, 2021
6
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
153
bam
126
bigWig
112
bed narrowPeak
66
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
198
Homo sapiens
Biosample type
132
tissue
66
cell line
primary cell
Organ
775
liver
639
connective tissue
594
pancreas
487
adipose tissue
373
heart
317
kidney
264
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
121
limb
118
epithelium
79
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
198
AMP
Genome assembly (visualization)
168
GRCh38
134
hg19
Lab
198
AMP-T2D consortium
biosample_type!
primary cell
files.file_type!
bed bedMethyl
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
stomach
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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