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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
17
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
119
Transcription
83
DNA accessibility
17
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
47
September, 2023
17
October, 2019
14
May, 2023
8
February, 2021
5
April, 2019
4
July, 2019
3
December, 2019
2
March, 2020
Available data
141
bed narrowPeak
93
bam
83
bigWig
70
bigBed narrowPeak
68
bed bed3+
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
230
Homo sapiens
Biosample type
211
tissue
19
cell line
primary cell
Organ
631
liver
571
connective tissue
494
pancreas
454
adipose tissue
258
heart
230
kidney
158
bone element
140
blood vessel
140
vasculature
115
artery
91
epithelium
60
blood
60
bodily fluid
51
eye
50
brain
37
limb
25
embryo
25
musculature of body
20
lung
17
nerve
17
spleen
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
47
KPMP
Genome assembly (visualization)
89
GRCh38
17
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
39
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
biosample_type!
primary cell
files.file_type!
bed broadPeak
month_released!
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
230 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
DNase-seq
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
64
49
7
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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