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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
20
snATAC-seq
17
total RNA-seq
16
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
37
DNA binding
36
DNA accessibility
26
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
49
May, 2021
23
February, 2023
19
April, 2020
8
January, 2021
6
May, 2022
Available data
24
bam
24
fastq
bed narrowPeak
6
txt
5
bigWig
Organism
104
Homo sapiens
Biosample type
primary cell
53
tissue
47
in vitro differentiated cells
5
cell line
Organ
33
pancreas
19
lung
1
thymus
Project
54
AMP
32
T1D
19
LungMap
Genome assembly (visualization)
5
hg19
Lab
2026
AMP-T2D consortium
86
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
biosample_type!
primary cell
files.file_type!
bed narrowPeak
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
6
11
11
lung
10
9
pancreas
4
1
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
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