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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
106
single cell RNA-seq
12
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
300
Transcription
12
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
control
1
broad histone mark
1
histone
1
histone modification
Date released
645
February, 2021
230
August, 2017
212
August, 2021
187
May, 2021
167
May, 2020
120
July, 2018
112
October, 2019
90
November, 2017
63
July, 2019
55
March, 2020
52
February, 2023
47
September, 2023
29
October, 2018
26
May, 2022
24
November, 2019
23
February, 2018
23
February, 2020
22
December, 2017
21
May, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
November, 2018
11
October, 2017
10
November, 2020
9
January, 2019
8
January, 2021
7
January, 2018
6
April, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
239
tsv
161
bam
160
bigWig
bed narrowPeak
64
xls
57
txt
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
vcf
Organism
331
Homo sapiens
Biosample type
285
tissue
primary cell
30
cell line
17
in vitro differentiated cells
Organ
124
pancreas
92
heart
66
kidney
17
liver
8
embryo
6
blood vessel
6
vasculature
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
332
AMP
Genome assembly (visualization)
135
hg19
131
GRCh38
Lab
244
AMP-T2D consortium
64
Katalin Susztak, Upenn
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
332 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
islet of Langerhans
121
1
kidney
49
8
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 11 more…
cell line
HepG2
9
4
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
See all biosamples
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