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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
single cell RNA-seq
Assay category
32
DNA accessibility
18
Transcription
1
3D chromatin structure
Date released
645
February, 2021
230
August, 2017
212
August, 2021
187
May, 2021
167
May, 2020
120
July, 2018
112
October, 2019
90
November, 2017
63
July, 2019
55
March, 2020
52
February, 2023
47
September, 2023
29
October, 2018
26
May, 2022
24
November, 2019
23
February, 2018
23
February, 2020
22
December, 2017
21
May, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
November, 2018
11
October, 2017
10
November, 2020
9
January, 2019
8
January, 2021
7
January, 2018
6
April, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
1
bam
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
56
Homo sapiens
Biosample type
primary cell
37
tissue
14
in vitro differentiated cells
6
cell line
Organ
24
pancreas
13
connective tissue
8
bone element
8
skeleton
4
eye
3
epithelium
1
brain
1
heart
Project
34
AMP
23
T1D
Genome assembly (visualization)
18
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
23
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
single cell RNA-seq
tissue
islet of Langerhans
15
5
2
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pigmented layer of retina
2
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cell line
EndoC_BH1
3
2
1
See all biosamples
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