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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
total RNA-seq
70
single cell RNA-seq
64
ChIP-seq
50
ATAC-seq
17
snATAC-seq
10
MeRIP-seq
7
Hi-C
4
WGBS
3
RRBS
3
pCHi-C
3
small RNA-seq
3
snDrop-seq
2
Capture-C
2
RNA microarray
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
443
Transcription
67
DNA accessibility
64
DNA binding
7
3D chromatin structure
7
DNA methylation
Target of assay
50
control
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
5
nucleotide modification
2
RNA binding protein
Date released
120
July, 2018
115
August, 2017
70
August, 2021
58
May, 2021
47
September, 2023
34
February, 2021
24
November, 2019
20
October, 2019
19
February, 2023
14
May, 2023
13
March, 2020
11
October, 2018
10
November, 2020
9
July, 2019
8
January, 2021
6
April, 2018
6
May, 2022
6
September, 2017
5
April, 2019
5
March, 2019
4
November, 2018
3
December, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
October, 2017
Available data
608
bam
534
bigWig
327
tsv
bed narrowPeak
213
fastq
157
bigBed narrowPeak
97
bed bed3+
89
bed broadPeak
75
bigBed broadPeak
68
txt
64
xls
19
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
5
csv
5
hic
4
bedpe bed3+
1
bedpe
1
hdf5
Organism
609
Homo sapiens
Biosample type
528
tissue
primary cell
82
cell line
1
in vitro differentiated cells
Organ
587
connective tissue
476
adipose tissue
454
pancreas
342
liver
195
heart
157
kidney
150
bone element
87
blood vessel
87
vasculature
73
brain
73
epithelium
65
artery
31
musculature of body
30
limb
26
eye
23
embryo
20
lung
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
534
AMP
47
KPMP
30
T1D
Genome assembly (visualization)
340
GRCh38
337
hg19
Lab
433
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
70
inconsistent ontology term
8
audit script error
Audit category:
9
missing controlled_by
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
611 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
Hi-C
WGBS
RRBS
pCHi-C
small RNA-seq
snDrop-seq
Capture-C
RNA microarray
STARR-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
278
6
30
21
7
4
3
1
kidney
49
64
7
11
6
1
1
body of pancreas
3
9
2
2
pancreas
2
3
4
1
2
1
1
endocrine pancreas
2
+ See 6 more…
cell line
EndoC_BH1
33
2
18
6
1
2
1
Panc1
7
1
RCC 7860 vector
1
1
1
HEK293T
2
RCC 7860 HIF1a re-expression
1
1
+ See 3 more…
in vitro differentiated cells
pancreatic PP cell
1
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