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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
9
DNase-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
Assay category
95
DNA binding
10
DNA accessibility
7
DNA methylation
5
Transcription
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
4
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
117
bam
117
fastq
106
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
Organism
117
Homo sapiens
Biosample type
84
cell line
33
tissue
primary cell
Organ
58
liver
33
blood
33
bodily fluid
16
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
117
AMP
Genome assembly (visualization)
105
GRCh38
97
hg19
Lab
117
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
files.file_type!
bedpe
month_released!
July, 2019
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
cell line
HepG2
45
1
5
GM12878
33
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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