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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
2
pCHi-C
Assay category
77
DNA binding
65
Transcription
51
DNA accessibility
2
DNA methylation
Target of assay
58
histone
58
histone modification
36
broad histone mark
22
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
60
February, 2021
50
May, 2019
35
February, 2023
30
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
153
bam
126
bigWig
112
bed narrowPeak
67
tsv
62
bigBed narrowPeak
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
197
Homo sapiens
Biosample type
137
tissue
60
cell line
primary cell
Organ
693
liver
622
connective tissue
577
pancreas
480
adipose tissue
371
heart
318
kidney
192
blood vessel
192
vasculature
158
bone element
147
brain
133
artery
122
limb
114
epithelium
65
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
197
AMP
Genome assembly (visualization)
165
GRCh38
129
hg19
Lab
197
AMP-T2D consortium
biosample_type!
primary cell
files.file_type!
bedpe bed3+
tagAlign
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
52
8
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