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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
628
ChIP-seq
243
total RNA-seq
68
ATAC-seq
9
DNase-seq
7
WGBS
7
single cell RNA-seq
4
pCHi-C
3
small RNA-seq
2
STARR-seq
1
Hi-C
1
RRBS
1
whole genome sequencing assay
Assay category
628
DNA binding
253
Transcription
77
DNA accessibility
8
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
345
transcription factor
155
histone modification
154
histone
125
control
82
recombinant protein
77
broad histone mark
77
narrow histone mark
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
69
February, 2021
63
December, 2017
54
August, 2017
53
November, 2018
50
May, 2019
40
May, 2022
36
August, 2021
35
February, 2023
33
October, 2019
15
July, 2019
5
January, 2019
4
February, 2020
4
March, 2020
3
June, 2019
1
December, 2018
Available data
822
bam
737
bigWig
547
bed narrowPeak
465
fastq
418
bigBed narrowPeak
235
tsv
88
tagAlign
66
bed broadPeak
66
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
bedpe bed3+
3
bigBed bedMethyl
3
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
974
Homo sapiens
Biosample type
493
tissue
466
cell line
primary cell
15
in vitro differentiated cells
Organ
775
liver
644
connective tissue
596
pancreas
488
adipose tissue
377
heart
318
kidney
265
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
117
epithelium
80
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
974
AMP
Genome assembly (visualization)
743
hg19
689
GRCh38
Lab
904
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
974 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
small RNA-seq
STARR-seq
Hi-C
RRBS
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
2
4
1
ascending aorta
16
2
1
+ See 4 more…
cell line
HepG2
378
14
1
1
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
hepatocyte
15
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