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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
78
ChIP-seq
21
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
127
Transcription
78
DNA binding
21
DNA accessibility
1
3D chromatin structure
Target of assay
44
transcription factor
22
histone
22
histone modification
12
narrow histone mark
10
broad histone mark
10
control
7
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
351
August, 2017
339
November, 2017
315
August, 2021
275
October, 2019
194
May, 2020
193
May, 2021
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
80
April, 2019
78
November, 2018
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
162
bam
162
bigWig
121
tsv
36
bed narrowPeak
35
fastq
30
bigBed narrowPeak
6
tagAlign
Organism
228
Homo sapiens
Biosample type
primary cell
132
in vitro differentiated cells
49
cell line
47
tissue
Organ
61
pancreas
27
blood
27
bodily fluid
26
epithelium
7
spleen
3
heart
2
embryo
1
connective tissue
1
liver
1
thymus
Project
226
AMP
2
T1D
Genome assembly (visualization)
162
hg19
157
GRCh38
Lab
179
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
1
inconsistent control
biosample_type!
primary cell
files.file_type!
bigBed broadPeak
month_released!
September, 2020
BIOSAMPLE
ASSAY
228 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
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cell line
GM12878
27
EndoC_BH1
4
1
16
HepG2
1
tissue
islet of Langerhans
36
spleen
7
cardiac atrium
1
cardiac ventricle
1
pancreas
1
+ See 1 more…
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