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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
28
ChIP-seq
2
single cell RNA-seq
Assay category
56
Transcription
45
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
20
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
1
July, 2019
Available data
94
bam
77
bigWig
68
bed narrowPeak
56
tsv
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
66
cell line
63
tissue
primary cell
Organ
664
liver
612
connective tissue
545
pancreas
474
adipose tissue
315
heart
240
kidney
176
blood vessel
176
vasculature
158
bone element
129
artery
124
brain
103
epithelium
71
limb
60
blood
60
bodily fluid
51
eye
41
musculature of body
33
nerve
29
embryo
22
spleen
19
lung
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
116
GRCh38
81
hg19
Lab
129
AMP-T2D consortium
biosample_type!
primary cell
files.file_type!
bigBed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
tibial artery
1
1
19
pulmonary artery
2
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