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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
pCHi-C
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
7
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
bigBed broadPeak
15
tagAlign
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
51
Homo sapiens
Biosample type
50
tissue
primary cell
1
cell line
Organ
716
liver
642
connective tissue
593
pancreas
487
adipose tissue
353
heart
250
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
29
hg19
10
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
primary cell
files.file_type!
bigBed broadPeak
organ_slims!
ovary
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
ATAC-seq
WGBS
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
cell line
MCF-7
1
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