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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
209
total RNA-seq
9
WGBS
5
RRBS
1
DNase-seq
Assay category
225
DNA binding
209
Transcription
14
DNA methylation
1
DNA accessibility
Target of assay
143
histone modification
142
histone
81
broad histone mark
60
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
329
August, 2017
315
August, 2021
223
October, 2019
May, 2020
193
May, 2021
120
July, 2018
117
February, 2023
91
November, 2017
75
July, 2019
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
29
October, 2018
25
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
14
November, 2018
10
November, 2020
9
January, 2019
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
342
bigWig
340
bam
231
fastq
205
tsv
109
bed narrowPeak
73
tagAlign
33
bed bed3+
27
bed broadPeak
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
448
Homo sapiens
Biosample type
382
tissue
primary cell
67
in vitro differentiated cells
Organ
253
pancreas
122
connective tissue
55
adipose tissue
48
liver
26
musculature of body
Project
449
AMP
Genome assembly (visualization)
322
hg19
301
GRCh38
Lab
449
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
month_released!
May, 2020
BIOSAMPLE
ASSAY
449 results
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ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
42
209
liver
43
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
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in vitro differentiated cells
adipocyte
67
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