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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
30
total RNA-seq
4
WGBS
4
pCHi-C
3
Hi-C
2
STARR-seq
1
ATAC-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
119
DNA binding
31
Transcription
5
DNA methylation
3
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
November, 2018
Available data
669
bam
bigWig
465
fastq
435
bed narrowPeak
356
bigBed narrowPeak
170
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
167
Homo sapiens
Biosample type
97
tissue
69
cell line
primary cell
1
in vitro differentiated cells
Organ
215
kidney
169
pancreas
166
heart
166
liver
107
connective tissue
100
bone element
73
blood vessel
73
vasculature
66
adipose tissue
63
brain
56
artery
53
eye
48
epithelium
31
limb
25
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
130
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
1
missing controlled_by
biosample_type!
primary cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
STARR-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
right lobe of liver
3
1
1
1
adrenal gland
1
cell line
HepG2
52
9
2
2
2
1
1
in vitro differentiated cells
hepatocyte
1
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