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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
total RNA-seq
96
ChIP-seq
21
ATAC-seq
3
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
183
Transcription
96
DNA binding
22
DNA accessibility
3
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
55
histone
55
histone modification
39
narrow histone mark
30
control
16
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
31
August, 2021
26
August, 2017
8
July, 2019
6
October, 2019
3
February, 2021
3
March, 2020
1
February, 2020
Available data
669
bam
611
bigWig
fastq
435
bed narrowPeak
356
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
312
Homo sapiens
Biosample type
278
tissue
34
cell line
primary cell
Organ
547
connective tissue
445
adipose tissue
387
pancreas
380
heart
318
kidney
312
liver
253
brain
199
blood vessel
vasculature
158
bone element
139
artery
122
limb
99
epithelium
80
musculature of body
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
10
embryo
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
312
AMP
Genome assembly (visualization)
222
hg19
177
GRCh38
Lab
241
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
biosample_type!
primary cell
files.file_type!
fastq
organ_slims!
ovary
vasculature
BIOSAMPLE
ASSAY
312 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
2
1
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
9
18
1
2
1
2
1
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