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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
32
total RNA-seq
15
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
33
DNA binding
32
Transcription
16
DNA accessibility
1
3D chromatin structure
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
8
control
3
RNA binding protein
3
nucleotide modification
3
transcription factor
1
chromatin remodeller
Date released
26
February, 2021
May, 2021
19
December, 2017
16
November, 2019
15
February, 2023
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
December, 2019
Available data
65
bam
61
bigWig
42
bed narrowPeak
34
tsv
19
fastq
15
bigBed narrowPeak
1
bedpe bed3+
1
hic
Organism
91
Homo sapiens
Biosample type
primary cell
58
cell line
19
in vitro differentiated cells
15
tissue
Organ
777
liver
644
connective tissue
533
pancreas
489
adipose tissue
377
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
92
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
35
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
89
AMP
3
T1D
Genome assembly (visualization)
75
hg19
60
GRCh38
Lab
86
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
59
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
biosample_type!
primary cell
files.file_type!
ibed
month_released!
May, 2021
September, 2017
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
14
29
3
6
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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