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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
95
DNA binding
32
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
89
histone
89
histone modification
64
narrow histone mark
25
broad histone mark
6
control
Date released
52
October, 2019
28
May, 2019
25
June, 2019
16
November, 2017
12
February, 2020
11
July, 2019
3
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
24
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
152
Homo sapiens
Biosample type
152
tissue
primary cell
Organ
695
liver
623
connective tissue
581
pancreas
481
adipose tissue
heart
318
kidney
193
blood vessel
193
vasculature
158
bone element
147
brain
133
artery
122
limb
115
epithelium
67
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
Genome assembly (visualization)
121
GRCh38
100
hg19
Lab
152
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
tagAlign
organ_slims!
heart
BIOSAMPLE
ASSAY
152 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
6
14
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
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