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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
July, 2019
3
February, 2020
Available data
113
bam
92
bed narrowPeak
90
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
Organism
117
Homo sapiens
Biosample type
117
tissue
Organ
769
liver
635
connective tissue
594
pancreas
479
adipose tissue
360
heart
314
kidney
253
brain
192
blood vessel
192
vasculature
158
bone element
138
artery
118
epithelium
117
limb
75
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
tagAlign bed3+
month_released!
July, 2019
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
distal epiphysis of femur
1
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