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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
208
DNA binding
32
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
183
histone
183
histone modification
113
narrow histone mark
70
broad histone mark
25
control
Date released
85
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
tagAlign bed3+
Organism
264
Homo sapiens
Biosample type
264
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
264
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
264
AMP
Genome assembly (visualization)
202
GRCh38
142
hg19
Lab
264
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
files.file_type!
tagAlign bed3+
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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