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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
47
ATAC-seq
6
total RNA-seq
2
Hi-C
1
pCHi-C
Assay category
57
DNA binding
47
DNA accessibility
6
Transcription
2
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
transcription factor
16
broad histone mark
16
narrow histone mark
8
control
6
RNA binding protein
Date released
397
November, 2017
266
October, 2019
263
August, 2017
192
August, 2021
163
June, 2019
115
February, 2021
115
May, 2019
113
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
72
May, 2021
66
May, 2022
50
May, 2020
47
September, 2023
41
November, 2019
40
May, 2024
35
December, 2018
30
July, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
18
March, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
March, 2023
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
187
bam
163
bigWig
tsv
43
bed narrowPeak
6
tagAlign
2
bedpe bed3+
2
hic
Organism
113
Homo sapiens
Biosample type
primary cell
58
in vitro differentiated cells
32
cell line
23
tissue
Organ
56
pancreas
35
epithelium
1
adipose tissue
1
connective tissue
1
thymus
Project
111
AMP
2
T1D
Genome assembly (visualization)
50
hg19
43
GRCh38
Lab
64
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
tsv
month_released!
August, 2018
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
5
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes
3
pancreatic PP cell
3
cell line
EndoC_BH1
14
17
1
tissue
islet of Langerhans
19
1
adipose tissue(adipose white tissue)
1
pancreas
1
thymus
1
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