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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
111
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
control
16
transcription factor
10
RNA binding protein
Date released
47
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
15
May, 2019
13
July, 2019
12
February, 2021
6
October, 2019
2
March, 2020
Available data
214
bigWig
185
bed narrowPeak
181
bam
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
hic
Organism
198
Homo sapiens
Biosample type
186
tissue
12
cell line
primary cell
Organ
501
liver
291
kidney
250
pancreas
217
brain
198
heart
150
connective tissue
115
blood vessel
115
vasculature
bone element
98
limb
74
artery
71
musculature of body
69
epithelium
66
adipose tissue
55
blood
55
bodily fluid
51
eye
27
nerve
19
lung
18
ureter
16
embryo
16
skeleton
16
spleen
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
198
AMP
Genome assembly (visualization)
190
GRCh38
112
hg19
Lab
158
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
biosample_type!
primary cell
files.file_type!
tsv
organ_slims!
bone element
target.investigated_as!
control
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
29
2
3
4
1
1
heart
12
18
1
1
1
heart right ventricle
11
1
2
1
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cell line
smooth muscle cell of the coronary artery
4
8
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