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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
129
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
14
February, 2021
13
July, 2019
6
October, 2019
2
March, 2020
Available data
214
bigWig
199
bam
185
bed narrowPeak
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
216
Homo sapiens
Biosample type
202
tissue
14
cell line
primary cell
Organ
liver
300
kidney
291
pancreas
242
brain
216
heart
182
connective tissue
133
blood vessel
133
vasculature
115
limb
100
bone element
90
adipose tissue
83
artery
78
epithelium
75
musculature of body
61
blood
61
bodily fluid
51
eye
38
nerve
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
216
AMP
Genome assembly (visualization)
190
GRCh38
112
hg19
Lab
176
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
biosample_type!
primary cell
files.file_type!
tsv
organ_slims!
liver
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
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cell line
smooth muscle cell of the coronary artery
6
8
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